STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BB562_08580Unannotated protein. (128 aa)    
Predicted Functional Partners:
BB562_09490
Unannotated protein.
  
     0.753
BB562_04575
Unannotated protein.
  
     0.719
BB562_11170
Unannotated protein.
  
     0.705
BB562_09495
Unannotated protein.
  
     0.696
fhs
Unannotated protein; Belongs to the formate--tetrahydrofolate ligase family.
       0.687
BB562_08585
Unannotated protein.
     
 0.687
BB562_14845
Unannotated protein.
  
     0.671
BB562_09500
Unannotated protein.
  
     0.651
BB562_00160
Unannotated protein.
  
     0.608
BB562_11250
Unannotated protein.
  
     0.603
Your Current Organism:
Lactobacillus pentosus
NCBI taxonomy Id: 1589
Other names: ATCC 8041, CCUG 33455, CIP 103156, DSM 20314, L. pentosus, LMG 10755, LMG:10755, NCAIM B.01727, NCCB 32014, NCDO 363, NCIMB 8026, NRRL B-227, NRRL B-473
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.