STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001188985_01676Unannotated protein. (472 aa)    
Predicted Functional Partners:
GCA_001188985_01681
Unannotated protein.
 
  
 0.843
BB562_11300
Unannotated protein.
 
  
 0.831
GCA_001188985_01678
Unannotated protein.
 
  
 0.802
BB562_11315
Unannotated protein.
  
 0.738
BB562_11285
Unannotated protein.
 
  
 0.674
GCA_001188985_01685
Unannotated protein.
 
  
 0.644
glf
Unannotated protein.
 
  
 0.640
GCA_001188985_01671
Unannotated protein.
  
  
 0.567
BB562_10585
Unannotated protein.
  
  
 0.567
BB562_11410
Unannotated protein; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.512
Your Current Organism:
Lactobacillus pentosus
NCBI taxonomy Id: 1589
Other names: ATCC 8041, CCUG 33455, CIP 103156, DSM 20314, L. pentosus, LMG 10755, LMG:10755, NCAIM B.01727, NCCB 32014, NCDO 363, NCIMB 8026, NRRL B-227, NRRL B-473
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.