STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BB562_02285Unannotated protein. (241 aa)    
Predicted Functional Partners:
BB562_03230
Unannotated protein.
  
     0.751
BB562_02280
Unannotated protein; Belongs to the glycosyl hydrolase 1 family.
       0.571
BB562_02275
Unannotated protein; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
 
    0.554
GCA_001188985_02767
Unannotated protein.
       0.471
BB562_00810
Unannotated protein.
 
  
 0.467
GCA_001188985_02816
Unannotated protein.
 
  
 0.454
BB562_02270
Unannotated protein.
       0.416
BB562_01185
Unannotated protein.
 
  
 0.409
nagA
Unannotated protein.
  
  
 0.409
GCA_001188985_00677
Unannotated protein.
 
  
 0.406
Your Current Organism:
Lactobacillus pentosus
NCBI taxonomy Id: 1589
Other names: ATCC 8041, CCUG 33455, CIP 103156, DSM 20314, L. pentosus, LMG 10755, LMG:10755, NCAIM B.01727, NCCB 32014, NCDO 363, NCIMB 8026, NRRL B-227, NRRL B-473
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.