STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BB562_10760Unannotated protein. (443 aa)    
Predicted Functional Partners:
BB562_10755
Unannotated protein.
 
 
 0.988
BB562_10110
Unannotated protein.
 
 
 0.953
BB562_02525
Unannotated protein.
 
 
 0.952
BB562_04380
Unannotated protein.
 
 
 0.951
BB562_01765
Unannotated protein.
 
  
 0.923
BB562_05880
Unannotated protein.
 
 
 0.921
GCA_001188985_00145
Unannotated protein.
 
   
 0.786
BB562_05220
Unannotated protein.
  
    0.592
BB562_14845
Unannotated protein.
  
     0.562
BB562_01480
Unannotated protein.
  
     0.541
Your Current Organism:
Lactobacillus pentosus
NCBI taxonomy Id: 1589
Other names: ATCC 8041, CCUG 33455, CIP 103156, DSM 20314, L. pentosus, LMG 10755, LMG:10755, NCAIM B.01727, NCCB 32014, NCDO 363, NCIMB 8026, NRRL B-227, NRRL B-473
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.