CEY00_Acc28082 protein (Actinidia chinensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CEY00_Acc28082

Hyaluronan/mRNA-binding protein. (366 aa)

Predicted Functional Partners:

CEY00_Acc00361

0.948

CEY00_Acc04051

0.894

CEY00_Acc09853

0.885

CEY00_Acc09414

0.877

CEY00_Acc14005

0.876

CEY00_Acc31420

0.864

CEY00_Acc31522

0.864

CEY00_Acc25741

0.862

CEY00_Acc14766

0.862

CEY00_Acc20387

0.859

Your Current Organism:

Actinidia chinensis

NCBI taxonomy Id: 1590841
Other names: A. chinensis var. chinensis, Actinidia chinensis var. chinensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEY00_Acc00361	CEY00_Acc04051	A0A2R6S0J1	A0A2R6QMR4	60S ribosomal protein.	60S ribosomal protein L39-3.	0.999
CEY00_Acc00361	CEY00_Acc09414	A0A2R6S0J1	A0A2R6QPN8	60S ribosomal protein.	60S ribosomal protein L37a-1.	0.999
CEY00_Acc00361	CEY00_Acc09853	A0A2R6S0J1	A0A2R6QUW1	60S ribosomal protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
CEY00_Acc00361	CEY00_Acc14005	A0A2R6S0J1	A0A2R6QQK0	60S ribosomal protein.	60S ribosomal protein L44; Belongs to the eukaryotic ribosomal protein eL42 family.	0.999
CEY00_Acc00361	CEY00_Acc14766	A0A2R6S0J1	A0A2R6QSP7	60S ribosomal protein.	60S ribosomal protein like.	0.922
CEY00_Acc00361	CEY00_Acc20387	A0A2R6S0J1	A0A2R6Q9F2	60S ribosomal protein.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.999
CEY00_Acc00361	CEY00_Acc25741	A0A2R6S0J1	A0A2R6PPK5	60S ribosomal protein.	60S ribosomal protein like.	0.922
CEY00_Acc00361	CEY00_Acc28082	A0A2R6S0J1	A0A2R6PM98	60S ribosomal protein.	Hyaluronan/mRNA-binding protein.	0.948
CEY00_Acc00361	CEY00_Acc31420	A0A2R6S0J1	A0A2R6PBN1	60S ribosomal protein.	60S ribosomal protein like.	0.999
CEY00_Acc00361	CEY00_Acc31522	A0A2R6S0J1	A0A2R6PBV5	60S ribosomal protein.	60S ribosomal protein like.	0.999
CEY00_Acc04051	CEY00_Acc00361	A0A2R6QMR4	A0A2R6S0J1	60S ribosomal protein L39-3.	60S ribosomal protein.	0.999
CEY00_Acc04051	CEY00_Acc09414	A0A2R6QMR4	A0A2R6QPN8	60S ribosomal protein L39-3.	60S ribosomal protein L37a-1.	0.999
CEY00_Acc04051	CEY00_Acc09853	A0A2R6QMR4	A0A2R6QUW1	60S ribosomal protein L39-3.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
CEY00_Acc04051	CEY00_Acc14005	A0A2R6QMR4	A0A2R6QQK0	60S ribosomal protein L39-3.	60S ribosomal protein L44; Belongs to the eukaryotic ribosomal protein eL42 family.	0.999
CEY00_Acc04051	CEY00_Acc14766	A0A2R6QMR4	A0A2R6QSP7	60S ribosomal protein L39-3.	60S ribosomal protein like.	0.992
CEY00_Acc04051	CEY00_Acc20387	A0A2R6QMR4	A0A2R6Q9F2	60S ribosomal protein L39-3.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.999
CEY00_Acc04051	CEY00_Acc25741	A0A2R6QMR4	A0A2R6PPK5	60S ribosomal protein L39-3.	60S ribosomal protein like.	0.992
CEY00_Acc04051	CEY00_Acc28082	A0A2R6QMR4	A0A2R6PM98	60S ribosomal protein L39-3.	Hyaluronan/mRNA-binding protein.	0.894
CEY00_Acc04051	CEY00_Acc31420	A0A2R6QMR4	A0A2R6PBN1	60S ribosomal protein L39-3.	60S ribosomal protein like.	0.999
CEY00_Acc04051	CEY00_Acc31522	A0A2R6QMR4	A0A2R6PBV5	60S ribosomal protein L39-3.	60S ribosomal protein like.	0.999