Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Daro_3264 | Daro_3265 | Daro_3264 | Daro_3265 | Cyanophycin synthetase. | Cyanophycin synthetase. | 0.965 |
Daro_3264 | ftsQ | Daro_3264 | Daro_3495 | Cyanophycin synthetase. | Cell division protein FtsQ; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly. | 0.962 |
Daro_3264 | murA | Daro_3264 | Daro_3393 | Cyanophycin synthetase. | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | 0.539 |
Daro_3264 | murB | Daro_3264 | Daro_0044 | Cyanophycin synthetase. | UDP-N-acetylmuramate dehydrogenase; Cell wall formation. | 0.734 |
Daro_3264 | murC | Daro_3264 | Daro_3497 | Cyanophycin synthetase. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.879 |
Daro_3264 | murG | Daro_3264 | Daro_3498 | Cyanophycin synthetase. | Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.918 |
Daro_3265 | Daro_3264 | Daro_3265 | Daro_3264 | Cyanophycin synthetase. | Cyanophycin synthetase. | 0.965 |
Daro_3265 | ftsQ | Daro_3265 | Daro_3495 | Cyanophycin synthetase. | Cell division protein FtsQ; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly. | 0.962 |
Daro_3265 | murA | Daro_3265 | Daro_3393 | Cyanophycin synthetase. | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | 0.539 |
Daro_3265 | murB | Daro_3265 | Daro_0044 | Cyanophycin synthetase. | UDP-N-acetylmuramate dehydrogenase; Cell wall formation. | 0.741 |
Daro_3265 | murC | Daro_3265 | Daro_3497 | Cyanophycin synthetase. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.879 |
Daro_3265 | murG | Daro_3265 | Daro_3498 | Cyanophycin synthetase. | Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.928 |
Daro_3661 | murA | Daro_3661 | Daro_3393 | Nucleotidyl transferase. | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | 0.811 |
Daro_3661 | murB | Daro_3661 | Daro_0044 | Nucleotidyl transferase. | UDP-N-acetylmuramate dehydrogenase; Cell wall formation. | 0.901 |
Daro_3661 | murC | Daro_3661 | Daro_3497 | Nucleotidyl transferase. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.806 |
ddl | ftsQ | Daro_3496 | Daro_3495 | D-alanine--D-alanine ligase; Cell wall formation. | Cell division protein FtsQ; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly. | 0.980 |
ddl | murA | Daro_3496 | Daro_3393 | D-alanine--D-alanine ligase; Cell wall formation. | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | 0.663 |
ddl | murB | Daro_3496 | Daro_0044 | D-alanine--D-alanine ligase; Cell wall formation. | UDP-N-acetylmuramate dehydrogenase; Cell wall formation. | 0.708 |
ddl | murC | Daro_3496 | Daro_3497 | D-alanine--D-alanine ligase; Cell wall formation. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.998 |
ddl | murE | Daro_3496 | Daro_3503 | D-alanine--D-alanine ligase; Cell wall formation. | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.996 |
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