STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daro_0291Penicillin-binding protein 6, Serine peptidase, MEROPS family S11; Belongs to the peptidase S11 family. (391 aa)    
Predicted Functional Partners:
Daro_0423
D-Ala-D-Ala carboxypeptidase PBP3, Serine peptidase, MEROPS family S13.
     
 0.918
Daro_0209
Penicillin-binding protein 1A.
     
 0.910
Daro_1016
Penicillin-binding protein 1A.
     
 0.910
lipA
Lipoate synthase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
       0.827
lipB
Lipoate-protein ligase B; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
       0.817
Daro_0289
Protein of unknown function DUF493; Belongs to the UPF0250 family.
  
    0.817
Daro_0290
Branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase.
       0.800
Daro_0292
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.780
Daro_3256
Nucleoside recognition.
  
  
 0.676
Daro_2920
Conserved hypothetical protein.
  
  
 0.579
Your Current Organism:
Dechloromonas aromatica
NCBI taxonomy Id: 159087
Other names: D. aromatica RCB, Dechloromonas aromatica RCB, Dechloromonas aromatica str. RCB, Dechloromonas sp. RCB
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