STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daro_0386Phenylacetic acid degradation operon negative regulatory protein paaX. (352 aa)    
Predicted Functional Partners:
Daro_0373
Phenylacetic acid degradation-related protein:Phenylacetic acid degradation protein PaaD.
 
   
 0.769
Daro_0377
Phenylacetate-CoA oxygenase, PaaG subunit.
 
  
 0.764
Daro_0380
Phenylacetate-CoA oxygenase, PaaJ subunit.
 
   
 0.737
Daro_0379
Phenylacetate-CoA oxygenase, PaaI subunit.
 
  
 0.720
Daro_0378
Phenylacetic acid degradation B.
 
   
 0.685
Daro_0370
Phenylacetic acid degradation protein paaN2.
  
   
 0.569
Daro_0381
Ferredoxin:Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region.
 
   
 0.558
Daro_0372
3-hydroxyacyl-CoA dehydrogenase.
 
   
 0.500
Daro_2546
Helicase, C-terminal.
   
    0.495
Daro_3449
N6 adenine-specific DNA methyltransferase, N12 class.
   
    0.495
Your Current Organism:
Dechloromonas aromatica
NCBI taxonomy Id: 159087
Other names: D. aromatica RCB, Dechloromonas aromatica RCB, Dechloromonas aromatica str. RCB, Dechloromonas sp. RCB
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