STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daro_0588Hypothetical protein. (125 aa)    
Predicted Functional Partners:
Daro_0587
Conserved hypothetical protein.
       0.592
Daro_3038
Hypothetical protein.
 
     0.513
Daro_0589
Hypothetical protein.
       0.505
Daro_3117
Conserved hypothetical protein.
  
     0.494
Daro_2832
ComEC/Rec2-related protein:DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.487
Daro_3202
ABC transporter, transmembrane region:ABC transporter related protein.
  
  
 0.474
Daro_3230
Alpha/beta hydrolase fold protein.
  
     0.474
Daro_0765
Type III secretion system outer membrane O protein.
   
 
 0.452
Daro_1028
TonB-dependent receptor.
  
 
 
 0.447
Daro_2927
Hypothetical protein.
  
     0.438
Your Current Organism:
Dechloromonas aromatica
NCBI taxonomy Id: 159087
Other names: D. aromatica RCB, Dechloromonas aromatica RCB, Dechloromonas aromatica str. RCB, Dechloromonas sp. RCB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.