STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daro_0775Helix-turn-helix, Fis-type. (457 aa)    
Predicted Functional Partners:
Daro_0774
PAS/PAC sensor signal transduction histidine kinase.
 
 0.989
fliE
Flagellar hook-basal body complex protein FliE.
 
  
 0.786
Daro_4149
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.780
Daro_0772
Flagellar motor switch protein FliG.
  
  
 0.732
Daro_0773
Flagellar FliF M-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
  
  
 0.723
Daro_0771
Flagellar assembly protein FliH.
  
  
 0.715
Daro_0770
ATPase FliI/YscN.
  
  
 0.691
Daro_2045
CheB methylesterase:MCP methyltransferase, CheR-type.
  
 
 0.643
Daro_0766
Flagellar motor switch protein FliM.
  
  
 0.635
Daro_0769
Flagellar FliJ and related protein.
  
    0.626
Your Current Organism:
Dechloromonas aromatica
NCBI taxonomy Id: 159087
Other names: D. aromatica RCB, Dechloromonas aromatica RCB, Dechloromonas aromatica str. RCB, Dechloromonas sp. RCB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.