Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Daro_0843 | Daro_0847 | Daro_0843 | Daro_0847 | DNA-3-methyladenine glycosylase II. | NlpBDapX lipoprotein. | 0.468 |
Daro_0843 | Daro_0848 | Daro_0843 | Daro_0848 | DNA-3-methyladenine glycosylase II. | Beta-lactamase-like protein. | 0.476 |
Daro_0843 | accA | Daro_0843 | Daro_0844 | DNA-3-methyladenine glycosylase II. | acetyl-CoA carboxylase carboxyltransferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. | 0.714 |
Daro_0843 | dapA | Daro_0843 | Daro_0846 | DNA-3-methyladenine glycosylase II. | Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.491 |
Daro_0843 | tilS | Daro_0843 | Daro_0845 | DNA-3-methyladenine glycosylase II. | PP-loop; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. | 0.720 |
Daro_0847 | Daro_0843 | Daro_0847 | Daro_0843 | NlpBDapX lipoprotein. | DNA-3-methyladenine glycosylase II. | 0.468 |
Daro_0847 | Daro_0848 | Daro_0847 | Daro_0848 | NlpBDapX lipoprotein. | Beta-lactamase-like protein. | 0.800 |
Daro_0847 | accA | Daro_0847 | Daro_0844 | NlpBDapX lipoprotein. | acetyl-CoA carboxylase carboxyltransferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. | 0.529 |
Daro_0847 | dapA | Daro_0847 | Daro_0846 | NlpBDapX lipoprotein. | Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.821 |
Daro_0847 | tilS | Daro_0847 | Daro_0845 | NlpBDapX lipoprotein. | PP-loop; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. | 0.529 |
Daro_0848 | Daro_0843 | Daro_0848 | Daro_0843 | Beta-lactamase-like protein. | DNA-3-methyladenine glycosylase II. | 0.476 |
Daro_0848 | Daro_0847 | Daro_0848 | Daro_0847 | Beta-lactamase-like protein. | NlpBDapX lipoprotein. | 0.800 |
Daro_0848 | Daro_1176 | Daro_0848 | Daro_1176 | Beta-lactamase-like protein. | Outer membrane efflux protein. | 0.433 |
Daro_0848 | Daro_1701 | Daro_0848 | Daro_1701 | Beta-lactamase-like protein. | Coenzyme PQQ synthesis D. | 0.428 |
Daro_0848 | Daro_3083 | Daro_0848 | Daro_3083 | Beta-lactamase-like protein. | DNA polymerase III chi subunit, HolC. | 0.471 |
Daro_0848 | accA | Daro_0848 | Daro_0844 | Beta-lactamase-like protein. | acetyl-CoA carboxylase carboxyltransferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. | 0.529 |
Daro_0848 | dapA | Daro_0848 | Daro_0846 | Beta-lactamase-like protein. | Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.764 |
Daro_0848 | tilS | Daro_0848 | Daro_0845 | Beta-lactamase-like protein. | PP-loop; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. | 0.546 |
Daro_1176 | Daro_0848 | Daro_1176 | Daro_0848 | Outer membrane efflux protein. | Beta-lactamase-like protein. | 0.433 |
Daro_1701 | Daro_0848 | Daro_1701 | Daro_0848 | Coenzyme PQQ synthesis D. | Beta-lactamase-like protein. | 0.428 |
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