Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Daro_1024Hypothetical protein. (82 aa)    
Predicted Functional Partners:
Daro_1023
Pyrrolo-quinoline quinone.
       0.737
Daro_1022
Cytochrome c-552 precursor.
       0.540
Daro_1025
Conserved hypothetical protein.
       0.518
Daro_1026
Beta-lactamase-like protein.
       0.518
Daro_1027
Outer membrane transport energization protein TonB; TC 2.C.1.1.1.
       0.518
Daro_1028
TonB-dependent receptor.
       0.518
Daro_1029
Signal transduction histidine kinase, glucose-6-phosphate specific.
       0.436
Daro_1030
Two component transcriptional regulator, LuxR family.
       0.436
Your Current Organism:
Dechloromonas aromatica
NCBI taxonomy Id: 159087
Other names: D. aromatica RCB, Dechloromonas aromatica RCB, Dechloromonas aromatica str. RCB, Dechloromonas sp. RCB
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