STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daro_1449Ferredoxin. (120 aa)    
Predicted Functional Partners:
Daro_1448
NifQ.
 
 0.973
Daro_0979
NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit.
  
 
 0.927
Daro_1450
Ferredoxin.
 
     0.897
Daro_1447
ADP-ribosylation/Crystallin J1.
 
 
   0.834
Daro_1455
Dinitrogenase iron-molybdenum cofactor biosynthesis.
 
     0.804
Daro_1454
Nitrogenase cofactor biosynthesis protein NifB.
 
    0.792
Daro_1508
Protein of unknown function DUF269.
 
    0.786
Daro_1394
NifZ.
 
     0.785
Daro_1418
Hypothetical protein.
 
    0.784
Daro_1451
Beta-lactamase-like:Flavodoxin/nitric oxide synthase.
 
  
 0.771
Your Current Organism:
Dechloromonas aromatica
NCBI taxonomy Id: 159087
Other names: D. aromatica RCB, Dechloromonas aromatica RCB, Dechloromonas aromatica str. RCB, Dechloromonas sp. RCB
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