Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Daro_1394 | Daro_1448 | Daro_1394 | Daro_1448 | NifZ. | NifQ. | 0.855 |
Daro_1394 | Daro_1454 | Daro_1394 | Daro_1454 | NifZ. | Nitrogenase cofactor biosynthesis protein NifB. | 0.838 |
Daro_1394 | Daro_1487 | Daro_1394 | Daro_1487 | NifZ. | Helix-turn-helix, Fis-type:Nif-specific regulatory protein. | 0.577 |
Daro_1394 | Daro_1488 | Daro_1394 | Daro_1488 | NifZ. | PAS protein. | 0.710 |
Daro_1394 | nifW | Daro_1394 | Daro_1395 | NifZ. | Nitrogen fixation protein NifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family. | 0.967 |
Daro_1448 | Daro_1394 | Daro_1448 | Daro_1394 | NifQ. | NifZ. | 0.855 |
Daro_1448 | Daro_1454 | Daro_1448 | Daro_1454 | NifQ. | Nitrogenase cofactor biosynthesis protein NifB. | 0.917 |
Daro_1448 | Daro_1487 | Daro_1448 | Daro_1487 | NifQ. | Helix-turn-helix, Fis-type:Nif-specific regulatory protein. | 0.517 |
Daro_1448 | Daro_1488 | Daro_1448 | Daro_1488 | NifQ. | PAS protein. | 0.574 |
Daro_1448 | nifW | Daro_1448 | Daro_1395 | NifQ. | Nitrogen fixation protein NifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family. | 0.865 |
Daro_1448 | rnfA-2 | Daro_1448 | Daro_1492 | NifQ. | Electron transport complex, RnfABCDGE type, A subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. | 0.689 |
Daro_1454 | Daro_1394 | Daro_1454 | Daro_1394 | Nitrogenase cofactor biosynthesis protein NifB. | NifZ. | 0.838 |
Daro_1454 | Daro_1448 | Daro_1454 | Daro_1448 | Nitrogenase cofactor biosynthesis protein NifB. | NifQ. | 0.917 |
Daro_1454 | Daro_1487 | Daro_1454 | Daro_1487 | Nitrogenase cofactor biosynthesis protein NifB. | Helix-turn-helix, Fis-type:Nif-specific regulatory protein. | 0.523 |
Daro_1454 | nifW | Daro_1454 | Daro_1395 | Nitrogenase cofactor biosynthesis protein NifB. | Nitrogen fixation protein NifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family. | 0.838 |
Daro_1487 | Daro_1394 | Daro_1487 | Daro_1394 | Helix-turn-helix, Fis-type:Nif-specific regulatory protein. | NifZ. | 0.577 |
Daro_1487 | Daro_1448 | Daro_1487 | Daro_1448 | Helix-turn-helix, Fis-type:Nif-specific regulatory protein. | NifQ. | 0.517 |
Daro_1487 | Daro_1454 | Daro_1487 | Daro_1454 | Helix-turn-helix, Fis-type:Nif-specific regulatory protein. | Nitrogenase cofactor biosynthesis protein NifB. | 0.523 |
Daro_1487 | Daro_1488 | Daro_1487 | Daro_1488 | Helix-turn-helix, Fis-type:Nif-specific regulatory protein. | PAS protein. | 0.926 |
Daro_1487 | Daro_3006 | Daro_1487 | Daro_3006 | Helix-turn-helix, Fis-type:Nif-specific regulatory protein. | PAS protein. | 0.618 |
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