Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Daro_1027 | Daro_1028 | Outer membrane transport energization protein TonB; TC 2.C.1.1.1. | TonB-dependent receptor. | 0.919 |
Daro_1027 | Daro_1044 | Outer membrane transport energization protein TonB; TC 2.C.1.1.1. | TonB-dependent receptor:TonB box, N-terminal. | 0.544 |
Daro_1027 | Daro_1684 | Outer membrane transport energization protein TonB; TC 2.C.1.1.1. | TonB-dependent receptor. | 0.544 |
Daro_1027 | Daro_1833 | Outer membrane transport energization protein TonB; TC 2.C.1.1.1. | FecR protein. | 0.432 |
Daro_1027 | Daro_1834 | Outer membrane transport energization protein TonB; TC 2.C.1.1.1. | TonB-dependent siderophore receptor. | 0.522 |
Daro_1027 | Daro_3944 | Outer membrane transport energization protein TonB; TC 2.C.1.1.1. | TonB-dependent receptor. | 0.544 |
Daro_1027 | Daro_4090 | Outer membrane transport energization protein TonB; TC 2.C.1.1.1. | TonB-dependent receptor. | 0.544 |
Daro_1028 | Daro_1027 | TonB-dependent receptor. | Outer membrane transport energization protein TonB; TC 2.C.1.1.1. | 0.919 |
Daro_1028 | Daro_1833 | TonB-dependent receptor. | FecR protein. | 0.522 |
Daro_1044 | Daro_1027 | TonB-dependent receptor:TonB box, N-terminal. | Outer membrane transport energization protein TonB; TC 2.C.1.1.1. | 0.544 |
Daro_1044 | Daro_1833 | TonB-dependent receptor:TonB box, N-terminal. | FecR protein. | 0.452 |
Daro_1044 | Daro_1834 | TonB-dependent receptor:TonB box, N-terminal. | TonB-dependent siderophore receptor. | 0.619 |
Daro_1055 | Daro_1833 | TonB-dependent siderophore receptor. | FecR protein. | 0.415 |
Daro_1055 | Daro_1834 | TonB-dependent siderophore receptor. | TonB-dependent siderophore receptor. | 0.475 |
Daro_1684 | Daro_1027 | TonB-dependent receptor. | Outer membrane transport energization protein TonB; TC 2.C.1.1.1. | 0.544 |
Daro_1684 | Daro_1833 | TonB-dependent receptor. | FecR protein. | 0.615 |
Daro_1832 | Daro_1833 | Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily. | FecR protein. | 0.964 |
Daro_1832 | Daro_1834 | Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily. | TonB-dependent siderophore receptor. | 0.853 |
Daro_1832 | Daro_1835 | Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily. | Hypothetical protein. | 0.413 |
Daro_1832 | Daro_3944 | Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily. | TonB-dependent receptor. | 0.407 |
page 1 of 3