STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daro_1878Response regulator receiver:Transcriptional regulatory protein, C-terminal. (229 aa)    
Predicted Functional Partners:
Daro_1879
ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal.
 
   0.962
Daro_3006
PAS protein.
  
 
0.942
Daro_0223
PAS protein.
  
 
0.885
Daro_0008
PAS protein.
  
 
0.881
Daro_1580
ATP-binding region, ATPase-like:Histidine kinase A, N-terminal.
 
   0.838
Daro_1181
ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal.
 
   0.836
Daro_0430
ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal.
 
   0.820
Daro_2816
ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal.
 
 0.817
Daro_3813
PAS/PAC sensor hybrid histidine kinase.
 
 
0.799
Daro_2473
Heavy metal sensor kinase; Member of a two-component regulatory system.
 
 0.797
Your Current Organism:
Dechloromonas aromatica
NCBI taxonomy Id: 159087
Other names: D. aromatica RCB, Dechloromonas aromatica RCB, Dechloromonas aromatica str. RCB, Dechloromonas sp. RCB
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