Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
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Daro_1985Regulatory protein, LysR:LysR, substrate-binding protein; Belongs to the LysR transcriptional regulatory family. (300 aa)    
Predicted Functional Partners:
Daro_1986
Alanine racemase region; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
     
 0.786
radA
DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
       0.773
Daro_1988
Diguanylate cyclase/phosphodiesterase.
       0.686
Daro_1989
Protein of unknown function DUF214.
       0.686
Daro_3834
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.668
Daro_0217
Glutamate synthase (NADH) large subunit.
     
 0.479
Daro_1984
Major facilitator superfamily MFS_1.
       0.455
Daro_1392
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.454
Daro_2792
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.441
Daro_2493
Uncharacterized conserved protein.
  
     0.417
Your Current Organism:
Dechloromonas aromatica
NCBI taxonomy Id: 159087
Other names: D. aromatica RCB, Dechloromonas aromatica RCB, Dechloromonas aromatica str. RCB, Dechloromonas sp. RCB
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