STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daro_2404Conserved hypothetical protein. (344 aa)    
Predicted Functional Partners:
Daro_2398
Lipopolysaccharide biosynthesis.
 
   
 0.952
Daro_2403
Polysaccharide deacetylase.
 
     0.952
Daro_2406
Conserved hypothetical protein.
 
     0.952
Daro_2399
Probable exopolysaccharide biosynthesis protein.
 
   
 0.951
Daro_2400
Hypothetical protein.
 
     0.951
Daro_2405
Glycosyl transferase, group 1.
 
     0.951
Daro_2407
Glycosyl transferase, group 1.
 
     0.947
Daro_2412
Conserved hypothetical protein.
 
   
 0.945
Daro_2409
Glycosyl transferase, group 1.
 
     0.941
Daro_2401
ATPase.
 
     0.934
Your Current Organism:
Dechloromonas aromatica
NCBI taxonomy Id: 159087
Other names: D. aromatica RCB, Dechloromonas aromatica RCB, Dechloromonas aromatica str. RCB, Dechloromonas sp. RCB
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.