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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daro_2442Peptidase S1 and S6, chymotrypsin/Hap. (259 aa)    
Predicted Functional Partners:
Daro_2439
TPR repeat:Tetratricopeptide TPR_3:Tetratricopeptide TPR_4.
 
   
 0.909
Daro_2437
ATP-binding region, ATPase-like:Histidine kinase A, N-terminal.
 
     0.860
Daro_2445
Hpr(Ser) kinase/phosphatase.
 
     0.846
Daro_2446
Conserved hypothetical protein.
 
   
 0.834
Daro_2441
Lytic transglycosylase, catalytic.
 
 
 0.832
Daro_2440
UDP-glucose/GDP-mannose dehydrogenase:6-phosphogluconate dehydrogenase, NAD-binding protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
       0.778
Daro_2429
Conserved hypothetical protein.
 
     0.753
Daro_2407
Glycosyl transferase, group 1.
  
    0.730
Daro_2406
Conserved hypothetical protein.
  
     0.729
Daro_2404
Conserved hypothetical protein.
  
     0.728
Your Current Organism:
Dechloromonas aromatica
NCBI taxonomy Id: 159087
Other names: D. aromatica RCB, Dechloromonas aromatica RCB, Dechloromonas aromatica str. RCB, Dechloromonas sp. RCB
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