STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daro_3300EAL protein. (417 aa)    
Predicted Functional Partners:
Daro_3299
Phosphomannomutase.
       0.768
Daro_3296
Lipopolysaccharide heptosyltransferase II.
       0.756
Daro_3297
Conserved hypothetical protein.
       0.751
Daro_3298
Esterase/lipase/thioesterase family active site.
       0.751
Daro_3295
Conserved hypothetical protein.
       0.634
ilvE
Branched chain amino acid aminotransferase apoenzyme; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
       0.605
Daro_3301
Hypothetical protein.
       0.547
Daro_0734
Response regulator receiver:CheW-like protein.
 
     0.503
Daro_3571
Diguanylate cyclase/phosphodiesterase.
 
   
 0.475
Daro_4127
EAL protein.
  
   
 0.456
Your Current Organism:
Dechloromonas aromatica
NCBI taxonomy Id: 159087
Other names: D. aromatica RCB, Dechloromonas aromatica RCB, Dechloromonas aromatica str. RCB, Dechloromonas sp. RCB
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