STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daro_3311Protein phosphatase 2C-like protein. (265 aa)    
Predicted Functional Partners:
Daro_0440
Dihydrolipoamide dehydrogenase.
  
 0.908
Daro_0438
Protein kinase.
 
 0.861
Daro_0925
Cyclic nucleotide-binding:Protein kinase.
 0.855
Daro_3849
Serine/threonine protein kinase.
 
 
 0.846
Daro_1602
Protein kinase:GAF.
 
 
 0.819
Daro_3359
Forkhead-associated.
 
 
 
 0.617
Daro_3314
FAD linked oxidase, N-terminal.
   
   0.564
Daro_3315
FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal.
   
   0.563
Daro_2941
Hypothetical protein.
  
 
 0.556
gcvT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine.
   
  0.548
Your Current Organism:
Dechloromonas aromatica
NCBI taxonomy Id: 159087
Other names: D. aromatica RCB, Dechloromonas aromatica RCB, Dechloromonas aromatica str. RCB, Dechloromonas sp. RCB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.