STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daro_3608PAAR protein. (92 aa)    
Predicted Functional Partners:
Daro_3609
Rhs element Vgr protein.
 
   
 0.950
Daro_3610
Hypothetical protein.
 
     0.942
Daro_3612
Conserved hypothetical phage tail region protein.
 
     0.937
Daro_3607
Tail lysozyme, putative.
 
    0.930
Daro_3606
LSU ribosomal protein L13E.
 
     0.928
Daro_3613
Conserved hypothetical phage tail region protein.
 
     0.927
Daro_3605
Hypothetical protein.
 
     0.924
Daro_3604
Hypothetical protein.
 
     0.916
Daro_3602
AAA ATPase, central region.
 
     0.914
Daro_3603
Hypothetical protein.
 
     0.914
Your Current Organism:
Dechloromonas aromatica
NCBI taxonomy Id: 159087
Other names: D. aromatica RCB, Dechloromonas aromatica RCB, Dechloromonas aromatica str. RCB, Dechloromonas sp. RCB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.