STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daro_3617Peptidase C14, caspase catalytic subunit p20. (278 aa)    
Predicted Functional Partners:
Daro_3618
Conserved hypothetical protein.
 
     0.858
Daro_3602
AAA ATPase, central region.
 
 
 0.678
Daro_3619
Hypothetical protein.
       0.663
Daro_3620
Hypothetical protein.
       0.525
Daro_1770
Lipolytic enzyme, G-D-S-L.
  
     0.465
Daro_2072
Sodium/proton antiporter, CPA1 family; TC 2.A.36.
  
     0.428
Daro_3599
WD-40 repeat-containing protein.
 
 
 
 0.407
Your Current Organism:
Dechloromonas aromatica
NCBI taxonomy Id: 159087
Other names: D. aromatica RCB, Dechloromonas aromatica RCB, Dechloromonas aromatica str. RCB, Dechloromonas sp. RCB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.