STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DPF_0003Transposase. (574 aa)    
Predicted Functional Partners:
DPF_0392
Deoxyhypusine synthase.
  
     0.591
DPF_2386
Hypothetical protein.
  
     0.564
DPF_0632
Hypothetical protein.
  
     0.563
DPF_0267
Hypothetical protein.
  
     0.544
DPF_1445
Cupin.
  
     0.529
DPF_0001
Hypothetical protein.
       0.527
DPF_0002
ABC transporter ATP-binding protein.
       0.527
DPF_0976
Hypothetical protein.
  
     0.499
DPF_0990
acyl-CoA thioesterase.
  
     0.428
DPF_0074
Hypothetical protein.
  
     0.421
Your Current Organism:
Desulfoplanes formicivorans
NCBI taxonomy Id: 1592317
Other names: D. formicivorans, DSM 28890, Desulfomicrobiaceae bacterium Pf12B, Desulfoplanes formicivorans Watanabe et al. 2015, NBRC 110391, strain Pf12B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.