STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DPF_0018Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides. (219 aa)    
Predicted Functional Partners:
hflX
GTP-binding proten HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.
 
      0.821
DPF_1241
Catalase.
   
 
 0.763
DPF_0984
Thiol reductase thioredoxin.
  
 0.725
DPF_1880
Hypothetical protein.
  
 0.725
DPF_1375
Hypothetical protein.
  
 0.712
DPF_2231
Glutaredoxin.
  
 0.712
DPF_1523
Molybdenum ABC transporter permease.
  
    0.669
fur
Fur family transcriptional regulator; Belongs to the Fur family.
  
  
 0.659
DPF_0567
Thioredoxin reductase.
  
 
 0.658
DPF_2247
Thioredoxin reductase.
  
 
 0.658
Your Current Organism:
Desulfoplanes formicivorans
NCBI taxonomy Id: 1592317
Other names: D. formicivorans, DSM 28890, Desulfomicrobiaceae bacterium Pf12B, Desulfoplanes formicivorans Watanabe et al. 2015, NBRC 110391, strain Pf12B
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