STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DPF_0116Sulfite reductase. (105 aa)    
Predicted Functional Partners:
DPF_0754
Sulfite reductase.
 
 
 
 0.985
DPF_0755
Sulfite reductase.
 
 
 
 0.985
DPF_0745
Menaquinol oxidoreductase.
 
   
 0.835
DPF_0746
Menaquinol oxidoreductase.
 
 
 
 0.825
DPF_0807
4Fe-4S ferredoxin.
   
 
 0.773
DPF_1047
Nitrite and sulfite reductase 4Fe-4S region.
   
 
 0.765
DPF_0747
Cytochrome C.
 
     0.745
DPF_0281
Adenylylsulfate reductase subunit beta.
  
   
 0.742
DPF_0280
Adenylylsulfate reductase subunit alpha.
  
   
 0.686
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
   
 0.686
Your Current Organism:
Desulfoplanes formicivorans
NCBI taxonomy Id: 1592317
Other names: D. formicivorans, DSM 28890, Desulfomicrobiaceae bacterium Pf12B, Desulfoplanes formicivorans Watanabe et al. 2015, NBRC 110391, strain Pf12B
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