STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DPF_0343Geranylgeranyl reductase. (340 aa)    
Predicted Functional Partners:
DPF_1340
Hypothetical protein.
  
 
 0.971
DPF_0643
Heterodisulfide reductase.
 
 
 0.872
DPF_0344
Hypothetical protein; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
  
    0.774
DPF_1410
Prenyltransferase; Belongs to the UbiA prenyltransferase family.
  
 
 0.741
DPF_0505
(Fe-S)-binding protein.
    
  0.697
DPF_0791
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
 0.689
menA
1,4-dihydroxy-2-naphthoate prenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily.
 
  
 0.651
DPF_2595
Fatty acid desaturase.
   
 
 0.591
DPF_1015
Octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.581
DPF_0470
Rubredoxin.
  
 
 0.557
Your Current Organism:
Desulfoplanes formicivorans
NCBI taxonomy Id: 1592317
Other names: D. formicivorans, DSM 28890, Desulfomicrobiaceae bacterium Pf12B, Desulfoplanes formicivorans Watanabe et al. 2015, NBRC 110391, strain Pf12B
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.