STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DPF_0457ABC transporter; Belongs to the ABC transporter superfamily. (358 aa)    
Predicted Functional Partners:
DPF_0455
ABC transporter permease.
 
 0.997
DPF_0454
Sugar ABC transporter permease.
 
 0.995
DPF_0452
ABC transporter substrate-binding protein.
 
 0.981
DPF_0170
Glycerol-3-phosphate transporter permease.
  
 0.913
DPF_0456
ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
 
0.902
ugpE
ABC transporter permease; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
 
 0.897
DPF_0453
Membrane protein.
 
    0.894
DPF_0171
Glycerol-3-phosphate ABC transporter substrate-binding protein.
  
 0.788
DPF_1523
Molybdenum ABC transporter permease.
   
  0.762
DPF_0778
Peptide ABC transporter substrate-binding protein; Belongs to the ABC transporter superfamily.
 
     
0.631
Your Current Organism:
Desulfoplanes formicivorans
NCBI taxonomy Id: 1592317
Other names: D. formicivorans, DSM 28890, Desulfomicrobiaceae bacterium Pf12B, Desulfoplanes formicivorans Watanabe et al. 2015, NBRC 110391, strain Pf12B
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.