STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DPF_0659ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. (306 aa)    
Predicted Functional Partners:
DPF_0660
Branched-chain amino acid ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
 0.995
DPF_0928
Branched-chain amino acid ABC transporter ATP-binding protein.
 
 0.987
DPF_0661
Membrane protein.
 
 
 0.981
DPF_2224
ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
 0.981
DPF_2223
Sugar ABC transporter ATP-binding protein.
 
 0.968
DPF_2222
ABC transporter substrate-binding protein.
 
 
 0.905
DPF_2225
ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
  
  
 
0.742
gpt
Xanthine phosphoribosyltransferase; Acts on guanine, xanthine and to a lesser extent hypoxanthine; Belongs to the purine/pyrimidine phosphoribosyltransferase family. XGPT subfamily.
       0.671
DPF_0657
Methyltransferase type 11.
       0.410
Your Current Organism:
Desulfoplanes formicivorans
NCBI taxonomy Id: 1592317
Other names: D. formicivorans, DSM 28890, Desulfomicrobiaceae bacterium Pf12B, Desulfoplanes formicivorans Watanabe et al. 2015, NBRC 110391, strain Pf12B
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