STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DPF_07484Fe-4S ferredoxin. (264 aa)    
Predicted Functional Partners:
DPF_0749
Hdr menaquinol oxidoreductase integral membrane subunit.
 
 0.988
DPF_1062
Molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 0.977
DPF_0746
Menaquinol oxidoreductase.
 
 
  0.957
DPF_0747
Cytochrome C.
 
  
 0.951
DPF_0745
Menaquinol oxidoreductase.
 
 
 0.950
DPF_0334
Pyruvate-ferredoxin oxidoreductase.
  
 
 0.940
DPF_1063
Cytochrome C.
 
 
 0.927
DPF_0085
Molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.878
DPF_1060
Molybdopterin oxidoreductase.
 
 0.869
DPF_0744
Hypothetical protein.
 
     0.864
Your Current Organism:
Desulfoplanes formicivorans
NCBI taxonomy Id: 1592317
Other names: D. formicivorans, DSM 28890, Desulfomicrobiaceae bacterium Pf12B, Desulfoplanes formicivorans Watanabe et al. 2015, NBRC 110391, strain Pf12B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.