STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DPF_0848Hypothetical protein. (383 aa)    
Predicted Functional Partners:
DPF_0847
Hypothetical protein.
  
   0.945
DPF_1753
Arylesterase.
  
 0.881
DPF_0849
Hypothetical protein.
       0.762
DPF_1499
Hypothetical protein.
  
 0.702
DPF_1640
Hypothetical protein.
  
 0.702
DPF_1709
Hypothetical protein.
  
 0.702
DPF_0851
Hypothetical protein.
       0.592
DPF_0850
Hypothetical protein.
       0.568
DPF_0416
Hypothetical protein.
  
 
 0.567
DPF_2508
Hypothetical protein.
     
 0.511
Your Current Organism:
Desulfoplanes formicivorans
NCBI taxonomy Id: 1592317
Other names: D. formicivorans, DSM 28890, Desulfomicrobiaceae bacterium Pf12B, Desulfoplanes formicivorans Watanabe et al. 2015, NBRC 110391, strain Pf12B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.