STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DPF_1041ABC transporter permease. (286 aa)    
Predicted Functional Partners:
DPF_1042
Spermidine/putrescine ABC transporter permease.
 
 0.995
DPF_2620
Spermidine/putrescine ABC transporter substrate-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
 0.994
DPF_1043
Spermidine/putrescine ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.988
DPF_2618
Putrescine/spermidine ABC transporter permease.
 
 0.985
DPF_1044
Spermidine/putrescine ABC transporter substrate-binding protein.
 
 0.984
potA
Putrescine/spermidine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
 
 0.928
DPF_2496
ABC transporter permease.
 
 
 0.858
DPF_2494
ABC transporter; Belongs to the ABC transporter superfamily.
 
 
 0.787
DPF_2619
Putrescine/spermidine ABC transporter permease.
  
  
 
0.683
DPF_1019
ABC transporter related protein; Belongs to the ABC transporter superfamily.
  
 
 0.639
Your Current Organism:
Desulfoplanes formicivorans
NCBI taxonomy Id: 1592317
Other names: D. formicivorans, DSM 28890, Desulfomicrobiaceae bacterium Pf12B, Desulfoplanes formicivorans Watanabe et al. 2015, NBRC 110391, strain Pf12B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.