STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DPF_1389Penicillin-binding protein. (785 aa)    
Predicted Functional Partners:
DPF_1390
Nucleoside recognition protein.
       0.731
DPF_1395
Penicillin-binding protein.
  
 
 
 0.714
DPF_0515
Hypothetical protein.
  
 
 
 0.707
DPF_0789
Peptidase M23.
  
   
 0.692
DPF_1357
Peptidase M23.
  
   
 0.677
mrdB
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
  
   
 0.673
DPF_1763
Peptidase M24.
  
   
 0.665
murC
UDP-N-acetylmuramate--alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
  
   
 0.656
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
      0.632
DPF_0520
Cell division protein FtsW; Belongs to the SEDS family.
  
   
 0.624
Your Current Organism:
Desulfoplanes formicivorans
NCBI taxonomy Id: 1592317
Other names: D. formicivorans, DSM 28890, Desulfomicrobiaceae bacterium Pf12B, Desulfoplanes formicivorans Watanabe et al. 2015, NBRC 110391, strain Pf12B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.