STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rlpA-2Lipoprotein; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. (139 aa)    
Predicted Functional Partners:
DPF_1440
N-acetylmuramoyl-L-alanine amidase.
 
 0.952
ftsA
Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.
  
 
 0.951
DPF_0515
Hypothetical protein.
  
 
 0.830
DPF_1395
Penicillin-binding protein.
  
 
 0.830
DPF_0334
Pyruvate-ferredoxin oxidoreductase.
   
   0.829
DPF_0520
Cell division protein FtsW; Belongs to the SEDS family.
   
 
 0.826
mrdB
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
   
 
 0.826
DPF_0524
Hypothetical protein; Essential cell division protein.
   
 
 0.818
DPF_1084
Lytic transglycosylase.
  
  
 0.751
DPF_2086
Colicin V production protein.
 
    0.667
Your Current Organism:
Desulfoplanes formicivorans
NCBI taxonomy Id: 1592317
Other names: D. formicivorans, DSM 28890, Desulfomicrobiaceae bacterium Pf12B, Desulfoplanes formicivorans Watanabe et al. 2015, NBRC 110391, strain Pf12B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.