STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DPF_1677Twitching motility protein PilT. (397 aa)    
Predicted Functional Partners:
DPF_0031
Type II secretion system protein F.
 
  
 0.784
DPF_1686
General secretion pathway protein GspF.
 
  
 0.784
DPF_0726
Type II secretion system protein GspF.
 
  
 0.783
DPF_1004
Peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.782
DPF_1676
Clp protease ATP-binding protein.
       0.523
DPF_1891
Hypothetical protein.
     
 0.506
DPF_1034
Hybrid sensor histidine kinase/response regulator.
     
 0.428
DPF_0334
Pyruvate-ferredoxin oxidoreductase.
  
    0.407
Your Current Organism:
Desulfoplanes formicivorans
NCBI taxonomy Id: 1592317
Other names: D. formicivorans, DSM 28890, Desulfomicrobiaceae bacterium Pf12B, Desulfoplanes formicivorans Watanabe et al. 2015, NBRC 110391, strain Pf12B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.