STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DPF_1681Hypothetical protein. (144 aa)    
Predicted Functional Partners:
DPF_0732
Hypothetical protein.
  
 
 0.716
DPF_1680
Hypothetical protein.
       0.668
DPF_1682
Hypothetical protein.
       0.594
DPF_1679
Hypothetical protein.
       0.588
DPF_1891
Hypothetical protein.
  
  
 0.574
DPF_0030
Type II secretion system protein E.
   
  0.559
DPF_0725
Type II secretory protein GspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
   
  0.559
DPF_1507
Secretion system protein E.
   
  0.559
DPF_1687
General secretion pathway protein GspE.
   
  0.559
DPF_0031
Type II secretion system protein F.
   
  
 0.517
Your Current Organism:
Desulfoplanes formicivorans
NCBI taxonomy Id: 1592317
Other names: D. formicivorans, DSM 28890, Desulfomicrobiaceae bacterium Pf12B, Desulfoplanes formicivorans Watanabe et al. 2015, NBRC 110391, strain Pf12B
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.