STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DPF_1723Hypothetical protein. (212 aa)    
Predicted Functional Partners:
DPF_2698
Hypothetical protein.
  
 0.997
DPF_1725
PTS sugar transporter subunit IIA.
  
 0.994
DPF_1724
PTS sugar transporter subunit IIBC.
  
 0.992
DPF_1727
PTS fructose transporter subunit IIA.
  
 
 0.826
DPF_2642
Phosphocarrier protein HPr.
    
 0.655
DPF_2697
Phosphocarrier protein HPr.
    
 0.655
DPF_1726
Nucleotide-binding protein; Displays ATPase and GTPase activities.
       0.626
hpf
Ribose ABC transporter permease; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
       0.626
DPF_2217
2-dehydro-3-deoxygluconokinase.
    
  0.546
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
    
  0.528
Your Current Organism:
Desulfoplanes formicivorans
NCBI taxonomy Id: 1592317
Other names: D. formicivorans, DSM 28890, Desulfomicrobiaceae bacterium Pf12B, Desulfoplanes formicivorans Watanabe et al. 2015, NBRC 110391, strain Pf12B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.