STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DPF_19812-oxoglutarate ferredoxin oxidoreductase subunit alpha. (385 aa)    
Predicted Functional Partners:
DPF_0334
Pyruvate-ferredoxin oxidoreductase.
  
 0.999
DPF_1979
Pyruvate ferredoxin oxidoreductase.
 
 0.997
DPF_1980
2-oxoacid ferredoxin oxidoreductase subunit beta.
 0.997
DPF_1982
4Fe-4S ferredoxin.
 
 
 0.995
DPF_1079
2-oxoglutarate oxidoreductase.
 0.993
DPF_1080
2-oxoacid:ferredoxin oxidoreductase subunit gamma.
 
 0.958
DPF_1824
Pyridine nucleotide-disulfide oxidoreductase.
  
 
 0.942
DPF_1077
(Fe-S)-binding protein.
 
 0.941
sucD
succinyl-CoA synthetase subunit beta; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.
 
 
 0.936
DPF_1823
Glutamate synthase; Belongs to the glutamate synthase family.
  
 
 0.763
Your Current Organism:
Desulfoplanes formicivorans
NCBI taxonomy Id: 1592317
Other names: D. formicivorans, DSM 28890, Desulfomicrobiaceae bacterium Pf12B, Desulfoplanes formicivorans Watanabe et al. 2015, NBRC 110391, strain Pf12B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.