node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DPF_0348 | DPF_1145 | DPF_0348 | DPF_1145 | GTPase YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | NusB/RsmB/TIM44; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.935 |
DPF_0348 | guaA | DPF_0348 | DPF_2425 | GTPase YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | GMP synthase; Catalyzes the synthesis of GMP from XMP. | 0.740 |
DPF_0348 | pnp | DPF_0348 | DPF_2337 | GTPase YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | Polynucleotide phosphorylase/polyadenylase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.545 |
DPF_0348 | rpsO | DPF_0348 | DPF_2338 | GTPase YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.569 |
DPF_0348 | truB | DPF_0348 | DPF_2339 | GTPase YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | tRNA pseudouridine(55) synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.852 |
DPF_1145 | DPF_0348 | DPF_1145 | DPF_0348 | NusB/RsmB/TIM44; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | GTPase YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | 0.935 |
DPF_1145 | guaA | DPF_1145 | DPF_2425 | NusB/RsmB/TIM44; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | GMP synthase; Catalyzes the synthesis of GMP from XMP. | 0.635 |
DPF_1145 | infB | DPF_1145 | DPF_2343 | NusB/RsmB/TIM44; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.418 |
DPF_1145 | nusA | DPF_1145 | DPF_2344 | NusB/RsmB/TIM44; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Transcription termination factor NusA; Participates in both transcription termination and antitermination. | 0.937 |
DPF_1145 | pnp | DPF_1145 | DPF_2337 | NusB/RsmB/TIM44; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Polynucleotide phosphorylase/polyadenylase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.493 |
DPF_1145 | rbfA | DPF_1145 | DPF_2341 | NusB/RsmB/TIM44; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.510 |
DPF_1145 | rpsO | DPF_1145 | DPF_2338 | NusB/RsmB/TIM44; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.612 |
DPF_1145 | truB | DPF_1145 | DPF_2339 | NusB/RsmB/TIM44; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | tRNA pseudouridine(55) synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.941 |
DPF_1270 | guaA | DPF_1270 | DPF_2425 | Riboflavin biosynthesis protein RibF; Belongs to the ribF family. | GMP synthase; Catalyzes the synthesis of GMP from XMP. | 0.461 |
DPF_1270 | rbfA | DPF_1270 | DPF_2341 | Riboflavin biosynthesis protein RibF; Belongs to the ribF family. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.439 |
DPF_1270 | rpsO | DPF_1270 | DPF_2338 | Riboflavin biosynthesis protein RibF; Belongs to the ribF family. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.412 |
DPF_1270 | truB | DPF_1270 | DPF_2339 | Riboflavin biosynthesis protein RibF; Belongs to the ribF family. | tRNA pseudouridine(55) synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.959 |
DPF_2340 | infB | DPF_2340 | DPF_2343 | Recombination protein RecJ. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.863 |
DPF_2340 | nusA | DPF_2340 | DPF_2344 | Recombination protein RecJ. | Transcription termination factor NusA; Participates in both transcription termination and antitermination. | 0.464 |
DPF_2340 | pnp | DPF_2340 | DPF_2337 | Recombination protein RecJ. | Polynucleotide phosphorylase/polyadenylase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.441 |