STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DPF_2473Diguanylate cyclase. (311 aa)    
Predicted Functional Partners:
DPF_1034
Hybrid sensor histidine kinase/response regulator.
 
 0.968
DPF_1176
Histidine kinase.
 0.960
DPF_1359
Diguanylate cyclase.
 0.958
DPF_1936
Hypothetical protein.
 0.932
DPF_0368
Hypothetical protein.
  
 0.916
DPF_2565
Hypothetical protein.
 
 0.885
DPF_1199
Hypothetical protein.
  
 0.846
xerC-2
Integrase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
       0.800
DPF_2438
Hypothetical protein.
  
 0.792
DPF_2321
Diguanylate cyclase.
  
 
 0.770
Your Current Organism:
Desulfoplanes formicivorans
NCBI taxonomy Id: 1592317
Other names: D. formicivorans, DSM 28890, Desulfomicrobiaceae bacterium Pf12B, Desulfoplanes formicivorans Watanabe et al. 2015, NBRC 110391, strain Pf12B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.