STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKQ33422.1Ribosome-associated factor Y. (96 aa)    
Predicted Functional Partners:
rpsU
30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.972
rpmH
50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
    
 
 0.971
rplY
50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
   
   0.971
rpsI
30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
    
 
 0.971
rplI
50S ribosomal protein L9; Binds to the 23S rRNA.
  
   0.971
rpmA
50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
    
 
 0.971
rpmB
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
   
   0.971
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
   0.970
rpsB
30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
    
   0.970
rpmF
50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
    
   0.970
Your Current Organism:
Coxiellalike endosymbiont
NCBI taxonomy Id: 1592897
Other names: C. endosymbiont, Coxiella-like endosymbiont
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