STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIP89189.1Rnf-Nqr subunit, membrane protein. (190 aa)    
Predicted Functional Partners:
SIP89091.1
Hypothetical protein.
       0.773
SIP89109.1
Hypothetical protein.
       0.773
SIP89129.1
Electron transport complex protein RnfC; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.
       0.773
SIP89143.1
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfD subunit.
       0.773
SIP89166.1
Hypothetical protein.
       0.773
SIP89211.1
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfA subunit.
       0.773
SIP89054.1
Hypothetical protein.
       0.556
SIP89073.1
23S rRNA pseudouridine955/2504/2580 synthase; Belongs to the pseudouridine synthase RluA family.
       0.556
SIP89234.1
Alpha-amylase.
       0.535
Your Current Organism:
Alkalispirochaeta americana
NCBI taxonomy Id: 159291
Other names: A. americana, ATCC BAA-392, Alkalispirochaeta americana (Hoover et al. 2003) Sravanthi et al. 2016, DSM 14872, Spirochaeta americana, Spirochaeta americana Hoover et al. 2003, Spirochaeta sp. ASpG1, strain ASpG1
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