STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ07330.1WD40 repeat. (750 aa)    
Predicted Functional Partners:
SIQ71523.1
Flp pilus assembly protein TadD, contains TPR repeats.
  
 
 0.905
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
 0.876
SIQ89821.1
Lipopolysaccharide biosynthesis regulator YciM, contains six TPR domains and a predicted metal-binding C-terminal domain.
  
 
 0.867
SIQ94900.1
Hypothetical protein.
  
 
 0.865
SIQ28566.1
Tetratricopeptide repeat-containing protein.
  
 
 0.861
SIP92762.1
Calcineurin-like phosphoesterase.
   
 0.860
SIQ18866.1
alanyl-tRNA synthetase.
   
 0.855
SIQ59303.1
Tetratricopeptide (TPR) repeat.
 
 
 0.855
SIQ14537.1
Acetoin utilization deacetylase AcuC.
    
 0.844
SIQ79902.1
Putative GTP pyrophosphokinase.
  
 
 0.843
Your Current Organism:
Alkalispirochaeta americana
NCBI taxonomy Id: 159291
Other names: A. americana, ATCC BAA-392, Alkalispirochaeta americana (Hoover et al. 2003) Sravanthi et al. 2016, DSM 14872, Spirochaeta americana, Spirochaeta americana Hoover et al. 2003, Spirochaeta sp. ASpG1, strain ASpG1
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