STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ06391.1Lysine 2,3-aminomutase. (374 aa)    
Predicted Functional Partners:
SIQ51928.1
L-lysine 2,3-aminomutase.
  
  
 
0.808
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
     
 0.763
SIP88270.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
   
 
 0.759
SIQ59818.1
Chemotaxis protein methyltransferase CheR.
    
   0.749
SIQ51897.1
Beta-lysine acetyltransferase.
  
 0.726
SIQ40208.1
lysyl-tRNA synthetase, class 2; Belongs to the class-II aminoacyl-tRNA synthetase family.
 
  
 0.724
SIQ01325.1
Purine-binding chemotaxis protein CheW.
    
   0.707
SIQ21882.1
MCP methyltransferase, CheR-type.
    
   0.707
SIQ06422.1
Leucine rich repeat-containing protein.
       0.651
SIQ06445.1
Leucine rich repeat-containing protein.
       0.472
Your Current Organism:
Alkalispirochaeta americana
NCBI taxonomy Id: 159291
Other names: A. americana, ATCC BAA-392, Alkalispirochaeta americana (Hoover et al. 2003) Sravanthi et al. 2016, DSM 14872, Spirochaeta americana, Spirochaeta americana Hoover et al. 2003, Spirochaeta sp. ASpG1, strain ASpG1
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