STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ27420.1Hypothetical protein. (546 aa)    
Predicted Functional Partners:
SIQ27447.1
NTP pyrophosphatase, house-cleaning of non-canonical NTPs.
     0.993
SIQ27388.1
Pyruvate phosphate dikinase, PEP/pyruvate binding domain.
       0.678
SIQ47957.1
L-serine ammonia-lyase; Belongs to the iron-sulfur dependent L-serine dehydratase family.
 
      0.654
SIQ27468.1
Hypothetical protein.
       0.565
SIQ12510.1
Pimeloyl-ACP methyl ester carboxylesterase.
 
     0.522
SIQ76297.1
L-fucose isomerase.
  
     0.511
SIQ69200.1
Hypothetical protein.
  
     0.503
SIQ27492.1
Hypothetical protein.
       0.501
Your Current Organism:
Alkalispirochaeta americana
NCBI taxonomy Id: 159291
Other names: A. americana, ATCC BAA-392, Alkalispirochaeta americana (Hoover et al. 2003) Sravanthi et al. 2016, DSM 14872, Spirochaeta americana, Spirochaeta americana Hoover et al. 2003, Spirochaeta sp. ASpG1, strain ASpG1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.