STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ25330.1DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family. (349 aa)    
Predicted Functional Partners:
SIQ48949.1
PTS system, fructose-specific IIC component.
  
  
 0.760
SIQ35912.1
Ribose-5-phosphate isomerase.
  
 
 0.602
SIQ68703.1
Ribose 5-phosphate isomerase B.
  
 
 0.602
SIQ76194.1
Ribose 5-phosphate isomerase B.
  
 
 0.602
SIQ12703.1
Fructose-1-phosphate kinase; Belongs to the carbohydrate kinase PfkB family.
  
  
 0.587
SIQ65190.1
1-phosphofructokinase/tagatose 6-phosphate kinase.
  
  
 0.587
SIQ25362.1
DNA-binding transcriptional regulator, FadR family.
  
  
 0.563
SIQ12537.1
Transcriptional antiterminator, BglG family.
  
  
 0.528
SIQ25300.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
       0.516
SIQ25420.1
5-deoxyglucuronate isomerase.
  
  
 0.480
Your Current Organism:
Alkalispirochaeta americana
NCBI taxonomy Id: 159291
Other names: A. americana, ATCC BAA-392, Alkalispirochaeta americana (Hoover et al. 2003) Sravanthi et al. 2016, DSM 14872, Spirochaeta americana, Spirochaeta americana Hoover et al. 2003, Spirochaeta sp. ASpG1, strain ASpG1
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