STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ33015.1ABC-2 type transport system permease protein. (235 aa)    
Predicted Functional Partners:
SIQ32984.1
ABC-2 type transport system ATP-binding protein.
 
 0.996
SIQ33047.1
ABC-type uncharacterized transport system.
  
 0.995
SIQ27779.1
ABC-2 type transport system ATP-binding protein.
  
 0.919
SIQ40323.1
ABC-2 type transport system ATP-binding protein.
  
 0.919
SIQ33083.1
Protein of unknown function.
       0.796
SIQ32947.1
Adenosylhomocysteinase.
       0.469
SIQ12752.1
Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain.
  
   
 0.411
Your Current Organism:
Alkalispirochaeta americana
NCBI taxonomy Id: 159291
Other names: A. americana, ATCC BAA-392, Alkalispirochaeta americana (Hoover et al. 2003) Sravanthi et al. 2016, DSM 14872, Spirochaeta americana, Spirochaeta americana Hoover et al. 2003, Spirochaeta sp. ASpG1, strain ASpG1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.