STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ68643.1Transketolase. (326 aa)    
Predicted Functional Partners:
SIQ68671.1
Transketolase.
 0.999
SIQ76261.1
Transketolase.
 0.999
SIQ00310.1
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
 
 0.954
SIQ35912.1
Ribose-5-phosphate isomerase.
  
 
 0.903
SIQ25127.1
Transaldolase.
  
 
 0.898
SIQ35886.1
Transketolase; Belongs to the transketolase family.
  
 
0.851
SIP88270.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
   
 
 0.837
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
  
 0.830
SIQ68703.1
Ribose 5-phosphate isomerase B.
  
 
 0.823
SIP98833.1
Glyceraldehyde-3-phosphate dehydrogenase (NAD+); Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
    
 0.821
Your Current Organism:
Alkalispirochaeta americana
NCBI taxonomy Id: 159291
Other names: A. americana, ATCC BAA-392, Alkalispirochaeta americana (Hoover et al. 2003) Sravanthi et al. 2016, DSM 14872, Spirochaeta americana, Spirochaeta americana Hoover et al. 2003, Spirochaeta sp. ASpG1, strain ASpG1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.