STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ84372.1Cell fate regulator YaaT, PSP1 superfamily (controls sporulation, competence, biofilm development). (306 aa)    
Predicted Functional Partners:
SIQ84343.1
Hypothetical protein.
  
  
 0.776
rny
Ribonucrease Y; Endoribonuclease that initiates mRNA decay.
 
  
 0.770
SIQ05239.1
Flagellar basal-body rod modification protein FlgD.
    
   0.749
SIQ59818.1
Chemotaxis protein methyltransferase CheR.
    
   0.749
SIQ88920.1
Flagellin; Component of the core of the flagella. Belongs to the bacterial flagellin family.
    
   0.749
recR
DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
      0.710
SIQ84308.1
Protein CcmA, bactofilin family.
     
 0.700
SIQ05037.1
Flagellar hook-basal body complex protein FliE.
   
   0.694
SIQ08890.1
Flagellar protein FlgJ.
    
   0.681
SIQ01325.1
Purine-binding chemotaxis protein CheW.
    
   0.660
Your Current Organism:
Alkalispirochaeta americana
NCBI taxonomy Id: 159291
Other names: A. americana, ATCC BAA-392, Alkalispirochaeta americana (Hoover et al. 2003) Sravanthi et al. 2016, DSM 14872, Spirochaeta americana, Spirochaeta americana Hoover et al. 2003, Spirochaeta sp. ASpG1, strain ASpG1
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