STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ91824.1Thioredoxin-like [2Fe-2S] ferredoxin. (88 aa)    
Predicted Functional Partners:
SIQ87298.1
NADH-quinone oxidoreductase subunit F.
  
 0.993
SIQ87518.1
NADH-quinone oxidoreductase subunit F/NADP-reducing hydrogenase subunit HndC.
  
 0.992
rnfB
Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
  
 0.983
SIP88270.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 0.972
SIQ87478.1
NADH-quinone oxidoreductase subunit G.
  
 0.957
SIQ91856.1
Iron only hydrogenase large subunit, C-terminal domain.
  
 0.956
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.913
SIQ91935.1
[FeFe] hydrogenase, group B1/B3.
  
 0.897
SIQ71123.1
Zinc protease; Belongs to the peptidase M16 family.
   
 
 0.868
SIQ42275.1
Lysophospholipase, alpha-beta hydrolase superfamily.
   
   0.846
Your Current Organism:
Alkalispirochaeta americana
NCBI taxonomy Id: 159291
Other names: A. americana, ATCC BAA-392, Alkalispirochaeta americana (Hoover et al. 2003) Sravanthi et al. 2016, DSM 14872, Spirochaeta americana, Spirochaeta americana Hoover et al. 2003, Spirochaeta sp. ASpG1, strain ASpG1
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